| As
of July 21, 2006 (schedule subject to change) |
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| Monday |
August 7 |
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Main Auditorium (Hall D) |
Room E1 |
Room E2 |
Room A (2nd Floor) |
Room B1 |
Room B2 |
Room B3 |
Hall G |
Hall C |
Hall F |
ISCB Committee Meetings |
| 7:30 a.m. - 7:30
p.m. |
Registration - Hall G |
Registration
& Posters |
Wireless Internet Available
7:30 a.m. - 9:00 p.m. |
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| 9:00
a.m. - 9:00 p.m. |
Posters on Display - Hall G |
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| 8:45
a.m. - 10:05 a.m. |
Opening Welcome and Introduction of Keynote 1 (Main Auditorium - Hall
D) |
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Exhibits
Open - 9:45 a.m - 5:15 p.m. |
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| 9:15
a.m. - 10:05 a.m. |
Keynote 1: Robert
Huber – Molecular machines for protein degradation
(Main Auditorium - Hall D) |
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| 10:05
a.m. - 10:30 a.m. |
Coffee Break
with Exhibitors - Hall C |
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Structural
Bioinformatics |
Database
and Data Integration |
Systsems
Biology |
Software
Demos |
Software
Demos |
Software
Demos |
Software
Demos |
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Coffee Break 10:05 a.m. - 10:30 a.m. |
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| 10:30
a.m. - 10:55 a.m. |
Paper
1: ZPRED: Predicting the distance to the membrane center
for residues in alpha-helical membrane proteins Erik
Granseth, Hĺkan Viklund, Arne Elofsson |
Paper
2: An experimental metagenome data management and analysis
system Victor Markowitz, Natalia Ivanova, Krishna Palaniappan Ernest Szeto,
Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos
Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak,
Phil Hugenholtz, Nikos Kyrpides |
Paper
3: Create and assess protein networks through molecular
characteristics of individual proteins Yanay
Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair,
Burkhard Rost |
ArrayExpress |
Integrated
Microbial Genomes (IMG) System |
SSAHA2 |
GINsim:
a software for the qualitative modelling, analysis and simulation
of genetic regulatory networks |
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| 10:55
a.m. - 11:20 a.m. |
Paper
4: A combinatorial pattern discovery approach for the prediction
of membrane dipping (re-entrant) loops Gorka
Lasso, John Antoniw, Jonathan Mullins |
Paper
5: Distance based algorithms for small biomolecule classification
and structural similarity search Emre Karakoc,
Artem Cherkasov, S. Cenk Sahinalp |
Paper
6: Dense subgraph computation via stochastic search: application
to detect transcriptional modules Logan Everett,
Li-San Wang, Sridhar Hannenhalli |
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| 11:20
a.m. - 11:45 p.m. |
Paper
7: Comparative footprinting of DNA-binding proteins Bruno
Contreras-Moreira, Julio Collado-Vides |
Paper
8: springScape: Visualisation of microarray and contextual
bioinformatic data using spring embedding and an information
landscape Timothy Ebbels, Bernard Buxton,
David Jones |
Paper
9: A decompositional approach to parameter estimation in
pathway modeling: A case study of the Akt and MAPK pathways
and their crosstalk Geoffrey Koh, Huey Fern
Carol Teong, Marie-Veronique Clement, David Hsu, P S Thiagarajan |
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| 11:45
p.m. - 12:10 p.m. |
Paper
10: The iRMSD: A local measure of sequence alignment accuracy
using structural information
Fabrice Armougom, Sebastien Moretti,
Vladimir Keduas, Cedric Notredame |
Paper
11: SNP Function Portal: a web database for exploring the
function implication of SNP alleles Pinglang
Wang, Manhong Dai, Weijian Xuan, Richard C McEachin, Anne U
Jackson, Laura J Scott, Brian Athey, Stanley J. Watson, Fan
Meng |
Paper
12: Bistable Switching and Excitable Behaviour in the Activation
of Src at Mitosis Hendrik Fuß, Werner Dubitzky, Stephen Downes, Mary Jo Kurth |
Web
Services at the European Bioinformatics Institute |
HP/Synamatix:
Enhancement and Acceleration of Genome Assembly using Novel
Pattern Indexing and Retrieval Application |
Pygr,
the Python Graph Database Framework for Bioinfomatics |
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| 12:10
p.m. - 12:35 p.m. |
Paper
13: Improved pruning algorithms and divide-and-conquer strategies
for dead-end elimination, with application to protein design
Ivelin Georgiev, Ryan Lilien, Bruce Donald |
Paper
14: Integrating structured biological data by kernel Maximum
Mean Discrepancy Karsten Borgwardt, Arthur Gretton, Malte Rasch, Hans-Peter Kriegel,
Bernhard Schoelkopf, Alex Smola |
Paper
15: Identification of metabolic units induced by environmental
signals Jose Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu |
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| 12:35
p.m. - 2:00 p.m. |
Lunch - Hall F |
ISCB
Open Business Meeting (12:45 p.m. - 1:45 p.m.) |
Birds
of a Feather Flock Together |
Birds
of a Feather Flock Together |
Birds
of a Feather Flock Together |
Birds
of a Feather Flock Together |
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Lunch 12:35 p.m. - 2:00 p.m. |
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Structural
Bioinformatics (continued) |
Human
Health |
Systems
Biology (continued) |
Software
Demos |
Software
Demos |
Software
Demos |
Software
Demos |
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| 2:00
p.m. - 2:25 p.m. |
Paper
16: Modelling sequential protein folding under kinetic control
using hp lattice models Fabien Huard, Charlotte Deane, Graham Wood |
Paper
17: Predicting the prognosis of breast cancer by integrating
clinical and microarray data with Bayesian networks Olivier
Gevaert, Frank De Smet, Dirk Timmerman, Yves Moreau, Bart De
Moor |
Paper
18: Inferring functional pathways from multi-perturbation
data Nir Yosef, Alon Kaufman, Eytan Ruppin |
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| 2:25
p.m. - 2:50 p.m. |
Paper
19: A probabilistic approach to protein backbone tracing
in electron density maps Frank DiMaio, Jude Shavlik, George Phillips |
Paper
20: AClAP, Autonomous hierarchical agglomerative Cluster
Analysis based Protocol to partition conformational datasets
Giovanni Bottegoni, Walter Rocchia, Maurizio
Recanatini, Andrea Cavalli |
Paper
21: Dynamical analysis of a generic Boolean model for the
control of the mammalian cell cycle Adrien
Fauré, Aurélien Naldi, Claudine Chaouiya, Denis Thieffry |
EBI:
Text Mining |
TreeDomViewer:
A tool for the visualization of phylogeny and protein domain
structure |
PATIKAweb |
BioModels
Database |
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| 2:50
p.m. - 3:15 p.m. |
Paper
22: Learning MHC binding Nebojsa Jojic,
M. Reyes-Gomez, D. Heckerman, C. Kadie,
O. Furman-Schueler |
Paper
23: Integrating copy number polymorphisms into array CGH
analysis using a robust HMM Sohrab Shah, Xiang Xuan, Ron DeLeeuw, Mehrnoush Khojasteh, Wan
Lam, Raymond Ng, Kevin Murphy |
Paper
24: Computational inference of the molecular logic for synaptic
connectivity in C. elegans Vinay
Varadan, David Miller III, Dimitris Anastassiou |
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Coffee Break 3:15 p.m. - 3:40 p.m. |
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| 3:15
p.m. - 3:40 p.m. |
Coffee Break
with Exhibitors - Hall C |
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| 3:40
p.m. - 4:05 p.m. |
New
Frontiers Panel Introduction and Session -
Chair, Goran Neshich, Embrapa/CNPTIA
Key Challenges in exploiting biomolecular data for Medicine
and Agriculture
Janet Thornton, European Bioinformatics
Institute, Wellcome Trust
Challenges for computational biology
Chris Sander, Memorial Sloan-Kettering
Cancer Center
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Paper
25: Decoding non-unique oligonucleotide hybridization experiments
of targets related by a phylogenetic tree Alexander
Schliep, Sven Rahmann |
Paper
26: An integrative approach for causal gene identification
and gene regulatory pathway inference Zhidong
Tu, Li Wang, Michelle Arbeitman, Ting Chen, Fengzhu Sun |
Genome
Expression Pathway Analysis Tool (GEPAT) |
PIRSF
Protein Classification System (PCS) |
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GenePro |
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| 4:05
p.m. - 4:30 p.m. |
PLoS
Track 1: Knowledge-Based Analysis of Genome-Wide SNP Scanning
Data Fan Meng |
Paper
27: An equilibrium partitioning model connecting gene expression
and cis-motif content Joe Mellor, Charles
DeLis |
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| 4:30
p.m. - 4:55 p.m. |
PLoS
Track 2: Datamining the Fourth Dimension from Crystal Structures:
Function-Structure-Entropy Relationships in Membrane Proteins Ilan Samish |
PLoS Panel: BioTermNet:
a system for biomedical text mining (Asako Koike), Imitating
manual curation of text-mined facts in biomedicine, Raul
Rodriguez-Esteban), SherLoc:
Comprehensive Prediction of Protein Subcellular Localization
by Integrating Clues from Sequence Data and the Literature
(Hagit Shatkay) |
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Poster Session with Authors (Odd Numbers) & Reception - Hall
G 6:00 p.m. - 9:00
p.m. |
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ISCB
Public Affairs - Room B6 6:00 p.m. - 7:00 p.m.
ISCB Conferences Committee - Room VIP
- 6:00 p.m. - 7:00 p.m. |
| 4:55 p.m. - 5:00
p.m. |
Introduction
of Keynote 2 (Main Auditorium - Hall D) |
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| 5:00 p.m. - 5:50
p.m. |
Keynote
2: Tom Blundell - Structural biology, informatics and the discovery
of new medicines (Main Auditorium - Hall D) |
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| 6:00
p.m. - 9:00 p.m. |
Poster Session
with Authors (Odd Numbers) & Reception - Hall G |
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| 9:00
p.m. |
Shuttles depart Convention Center to Hotels |
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